Updated URL for GeneNetwork API
Remove an example from the vignette that no longer works:
"get the information for a specific group," list_groups("rat", "HSNIH-Palmer")
run_gemma() and run_rqtl() are working again.
Trapped additional errors by looking for Error: in title of
output. (in new internal function error_in_title())
get_geno() is working again
info_pheno() can no longer get a list of traits within a group
list_groups() no longer takes an individual group name
query_gn() to change NULL output to NA.run_rqtl().gn2.genenetwork.org/api/pre_v1Fixed run_gemma(), run_rqtl(), and run_correlations() as
genenetwork API changed (now giving JSON output)
list_groups() can be used to get information for a specific group.
list_datasets() can be used to get information for a specific dataset.
Remove info_dataset() and info_datasets(); for both can be just
use list_datasets().
Include limit argument for info_pheno().
list_groups() was messed up when a species was provided.
Fix get_geno() so it returns NULL if the result has no data.