{
  "_id": "6a25dfbd794753ddbc3e16a5",
  "Package": "GNapi",
  "Version": "0.3-8",
  "Date": "2023-07-26",
  "Title": "Connection to the GeneNetwork API",
  "Description": "Tools for connecting to the GeneNetwork API.",
  "Author": "Karl W Broman [aut, cre]\n(<https://orcid.org/0000-0002-4914-6671>)",
  "Maintainer": "Karl W Broman <broman@wisc.edu>",
  "Authors@R": "c(person(\"Karl W\", \"Broman\", role=c(\"aut\", \"cre\"),\nemail=\"broman@wisc.edu\", comment=c(ORCID = \"0000-0002-4914-6671\")))",
  "License": "MIT + file LICENSE",
  "URL": "https://github.com/rqtl/GNapi",
  "BugReports": "https://github.com/rqtl/GNapi/issues",
  "Encoding": "UTF-8",
  "ByteCompile": "true",
  "VignetteBuilder": "knitr",
  "Roxygen": "list(markdown=TRUE)",
  "Config/roxygen2/version": "8.0.0",
  "Config/pak/sysreqs": "libssl-dev",
  "Repository": "https://rqtl.r-universe.dev",
  "Date/Publication": "2026-06-07 20:49:05 UTC",
  "RemoteUrl": "https://github.com/rqtl/GNapi",
  "RemoteRef": "HEAD",
  "RemoteSha": "b6150c2c1d34141641617f176b26dc9a17944c79",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-06-07 21:08:25 UTC",
    "User": "root"
  },
  "MD5sum": "792599b4473766ff8bb84e6e41799514",
  "_user": "rqtl",
  "_type": "src",
  "_file": "GNapi_0.3-8.tar.gz",
  "_fileid": "b90f2461f689556a76b19c7a12fdfd4ea3dc1b698ee3e302aa296677fc5b87f9",
  "_filesize": 114545,
  "_sha256": "b90f2461f689556a76b19c7a12fdfd4ea3dc1b698ee3e302aa296677fc5b87f9",
  "_created": "2026-06-07T21:08:25.000Z",
  "_published": "2026-06-07T22:59:39.368Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 79992088404,
      "time": 473,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7468056136"
    },
    {
      "job": 79992088405,
      "time": 170,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7468016150"
    },
    {
      "job": 79992088399,
      "time": 119,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7468009101"
    },
    {
      "job": 79992088393,
      "time": 142,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7468012188"
    },
    {
      "job": 79991890587,
      "time": 189,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7467992888"
    },
    {
      "job": 79992088394,
      "time": 119,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7468009144"
    },
    {
      "job": 79992088402,
      "time": 121,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7468009400"
    },
    {
      "job": 79992088395,
      "time": 110,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7468007856"
    },
    {
      "job": 79992088403,
      "time": 118,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7468009026"
    }
  ],
  "_buildurl": "https://github.com/r-universe/rqtl/actions/runs/27104797275",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/rqtl/GNapi",
  "_commit": {
    "id": "b6150c2c1d34141641617f176b26dc9a17944c79",
    "author": "Karl Broman <kbroman@gmail.com>",
    "committer": "Karl Broman <kbroman@gmail.com>",
    "message": "Revise r-universe badge; add badges to vignette\n",
    "time": 1780865345
  },
  "_maintainer": {
    "name": "Karl W Broman",
    "email": "broman@wisc.edu",
    "login": "kbroman",
    "mastodon": "@kbroman@rstats.me",
    "orcid": "0000-0002-4914-6671",
    "description": "Professor in Dept of Biostatistics & Medical Informatics at UW–Madison. Applied statistician working on statistical genomics.\n",
    "uuid": 53972
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.1.0",
      "role": "Depends"
    },
    {
      "package": "utils",
      "role": "Imports"
    },
    {
      "package": "jsonlite",
      "role": "Imports"
    },
    {
      "package": "httr",
      "role": "Imports"
    },
    {
      "package": "testthat",
      "role": "Suggests"
    },
    {
      "package": "devtools",
      "role": "Suggests"
    },
    {
      "package": "roxygen2",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    }
  ],
  "_owner": "rqtl",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2026-19",
      "n": 1
    },
    {
      "week": "2026-20",
      "n": 1
    },
    {
      "week": "2026-21",
      "n": 1
    },
    {
      "week": "2026-23",
      "n": 1
    }
  ],
  "_tags": [],
  "_stars": 0,
  "_contributors": [
    {
      "user": "kbroman",
      "count": 116,
      "uuid": 53972
    },
    {
      "user": "gregfa",
      "count": 2,
      "uuid": 36859310
    },
    {
      "user": "ameliebaud",
      "count": 1,
      "uuid": 22657408
    }
  ],
  "_userbio": {
    "uuid": 9142954,
    "type": "organization",
    "name": "R/qtl"
  },
  "_downloads": {
    "count": 0,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/GNapi"
  },
  "_devurl": "https://github.com/rqtl/gnapi",
  "_searchresults": 5,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/GNapi.html",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_cranurl": false,
  "_exports": [
    "check_gn",
    "get_geno",
    "get_pheno",
    "gnapi_url",
    "info_pheno",
    "list_datasets",
    "list_groups",
    "list_species",
    "run_correlation",
    "run_gemma",
    "run_rqtl"
  ],
  "_help": [
    {
      "page": "check_gn",
      "title": "Check if GeneNetwork is live",
      "topics": [
        "check_gn"
      ]
    },
    {
      "page": "get_geno",
      "title": "Get genotype data",
      "topics": [
        "get_geno"
      ]
    },
    {
      "page": "get_pheno",
      "title": "Get phenotype data",
      "topics": [
        "get_pheno"
      ]
    },
    {
      "page": "gnapi_url",
      "title": "The URL for the GeneNetwork API",
      "topics": [
        "gnapi_url"
      ]
    },
    {
      "page": "info_pheno",
      "title": "Get summary information about a phenotype",
      "topics": [
        "info_pheno"
      ]
    },
    {
      "page": "list_datasets",
      "title": "List available datasets for a group",
      "topics": [
        "list_datasets"
      ]
    },
    {
      "page": "list_groups",
      "title": "Get list of groups",
      "topics": [
        "list_groups"
      ]
    },
    {
      "page": "list_species",
      "title": "Get list of species",
      "topics": [
        "list_species"
      ]
    },
    {
      "page": "run_correlation",
      "title": "Calculate correlations",
      "topics": [
        "run_correlation"
      ]
    },
    {
      "page": "run_gemma",
      "title": "Run gemma",
      "topics": [
        "run_gemma"
      ]
    },
    {
      "page": "run_rqtl",
      "title": "Run R/qtl",
      "topics": [
        "run_rqtl"
      ]
    }
  ],
  "_readme": "https://github.com/rqtl/GNapi/raw/HEAD/README.md",
  "_rundeps": [
    "askpass",
    "curl",
    "httr",
    "jsonlite",
    "mime",
    "openssl",
    "R6",
    "sys"
  ],
  "_vignettes": [
    {
      "source": "GNapi.Rmd",
      "filename": "GNapi.html",
      "title": "R/GNapi User Guide",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Fetch species list",
        "Fetch Groups/RISets",
        "Fetch genotypes for Group/RIset",
        "Fetch datasets",
        "Fetch sample data for dataset",
        "Information for mRNA assay/probeset",
        "Fetch individual phenotype info",
        "Fetch trait information",
        "Fetch sample data for a single trait",
        "For mRNA expression/probeset",
        "For classical phenotypes",
        "Analyses",
        "Gemma",
        "R/qtl",
        "Correlations"
      ],
      "created": "2019-05-28 18:40:17",
      "modified": "2026-06-07 20:49:05",
      "commits": 11
    }
  ],
  "_score": 3.6020599913279625,
  "_indexed": true,
  "_nocasepkg": "gnapi",
  "_universes": [
    "rqtl",
    "kbroman"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.3-8",
      "date": "2026-06-07T21:15:34.000Z",
      "distro": "noble",
      "commit": "b6150c2c1d34141641617f176b26dc9a17944c79",
      "fileid": "73d0f6218b88cae209bc3f0db78d2ad461f58021d22585e10b032abb854a92b7",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/rqtl/actions/runs/27104797275"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "0.3-8",
      "date": "2026-06-07T21:10:37.000Z",
      "distro": "noble",
      "commit": "b6150c2c1d34141641617f176b26dc9a17944c79",
      "fileid": "bfce41a36f924368c1c4f3129407a50747560de97790ba6083928aace695fa8e",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/rqtl/actions/runs/27104797275"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.3-8",
      "date": "2026-06-07T21:09:52.000Z",
      "commit": "b6150c2c1d34141641617f176b26dc9a17944c79",
      "fileid": "4a6d1dbcc93cd13d231b69bb0e91db718182ac7e5ae020876a1f4c43a036c5ea",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/rqtl/actions/runs/27104797275"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "0.3-8",
      "date": "2026-06-07T21:10:12.000Z",
      "commit": "b6150c2c1d34141641617f176b26dc9a17944c79",
      "fileid": "01b5927bd92ee092960f82f03426c43981edaaa6337cbb978e28dabcf499df91",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/rqtl/actions/runs/27104797275"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.3-8",
      "date": "2026-06-07T21:10:37.000Z",
      "commit": "b6150c2c1d34141641617f176b26dc9a17944c79",
      "fileid": "0ebdbcb41a8fedb3854bca688bcfd073e51e1be0043e7acd40e9d436c3b5df29",
      "status": "success",
      "buildurl": "https://github.com/r-universe/rqtl/actions/runs/27104797275"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.3-8",
      "date": "2026-06-07T21:09:37.000Z",
      "commit": "b6150c2c1d34141641617f176b26dc9a17944c79",
      "fileid": "81b9a8698a3593e3ea0a638ff3c72413ede5ad226b904288619528c0c295c6b9",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/rqtl/actions/runs/27104797275"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.3-8",
      "date": "2026-06-07T21:09:31.000Z",
      "commit": "b6150c2c1d34141641617f176b26dc9a17944c79",
      "fileid": "f2bc3a3b7418ec333df3f52ceffa3b9fe5fac9652d8e16783b1dfda23d80028f",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/rqtl/actions/runs/27104797275"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "0.3-8",
      "date": "2026-06-07T21:09:36.000Z",
      "commit": "b6150c2c1d34141641617f176b26dc9a17944c79",
      "fileid": "6866a65be489dda8fca0a296fc145240b37f0056842fbe4df21300c3966c330a",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/rqtl/actions/runs/27104797275"
    }
  ]
}