{
  "_id": "6a58dc7d09eb0996dd68b4c4",
  "Package": "mmconvert",
  "Version": "0.13-1",
  "Date": "2026-07-16",
  "Title": "Mouse Map Converter",
  "Description": "Convert mouse genome positions between the build 39\nphysical map and the genetic map of Cox et al. (2009)\n<doi:10.1534/genetics.109.105486>.",
  "Author": "Karl W Broman [aut, cre]\n(<https://orcid.org/0000-0002-4914-6671>)",
  "Maintainer": "Karl W Broman <broman@wisc.edu>",
  "Authors@R": "person(\"Karl W\", \"Broman\", role=c(\"aut\", \"cre\"),\nemail=\"broman@wisc.edu\", comment=c(ORCID = \"0000-0002-4914-6671\"))",
  "License": "GPL-3",
  "URL": "https://github.com/rqtl/mmconvert",
  "BugReports": "https://github.com/rqtl/mmconvert/issues",
  "LazyData": "true",
  "Encoding": "UTF-8",
  "ByteCompile": "true",
  "Roxygen": "list(markdown=TRUE)",
  "Config/roxygen2/version": "8.0.0",
  "Repository": "https://rqtl.r-universe.dev",
  "Date/Publication": "2026-07-16 11:52:31 UTC",
  "RemoteUrl": "https://github.com/rqtl/mmconvert",
  "RemoteRef": "HEAD",
  "RemoteSha": "140bf23d74d73798455a0690972746dbbaba8e11",
  "NeedsCompilation": "yes",
  "Packaged": {
    "Date": "2026-07-16 13:21:12 UTC",
    "User": "root"
  },
  "_user": "rqtl",
  "_type": "src",
  "_file": "mmconvert_0.13-1.tar.gz",
  "_fileid": "https://r2.ropensci.org/090835dbfa4b87f3840a7958482a7c05d153fa2bc8f8bc02a2dd52422be69783",
  "_filesize": 2257541,
  "_sha256": "090835dbfa4b87f3840a7958482a7c05d153fa2bc8f8bc02a2dd52422be69783",
  "_expires": "2026-10-24T13:28:26.000Z",
  "_created": "2026-07-16T13:21:12.000Z",
  "_published": "2026-07-16T13:28:28.421Z",
  "_jobs": [
    {
      "job": 87632535341,
      "time": 169,
      "config": "linux-devel-arm64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "8376840965"
    },
    {
      "job": 87632535366,
      "time": 148,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "8376829580"
    },
    {
      "job": 87632535340,
      "time": 150,
      "config": "linux-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8376831454"
    },
    {
      "job": 87632535308,
      "time": 157,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8376833888"
    },
    {
      "job": 87632535280,
      "time": 149,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "8376843738"
    },
    {
      "job": 87632535306,
      "time": 194,
      "config": "macos-oldrel-x86_64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "8376854462"
    },
    {
      "job": 87632535264,
      "time": 86,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8376807728"
    },
    {
      "job": 87632535298,
      "time": 376,
      "config": "macos-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8376943738"
    },
    {
      "job": 87631668966,
      "time": 215,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8376754916"
    },
    {
      "job": 87632535292,
      "time": 126,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "8376819286"
    },
    {
      "job": 87632535320,
      "time": 99,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "8376806095"
    },
    {
      "job": 87632535448,
      "time": 109,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "8376810581"
    },
    {
      "job": 87632535329,
      "time": 101,
      "config": "windows-release",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8376807099"
    }
  ],
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/rqtl/actions/runs/29501590075",
  "_status": "success",
  "_upstream": "https://github.com/rqtl/mmconvert",
  "_commit": {
    "id": "140bf23d74d73798455a0690972746dbbaba8e11",
    "author": "Karl Broman <kbroman@gmail.com>",
    "committer": "Karl Broman <kbroman@gmail.com>",
    "message": "change to tests to avoid Note on CRAN\n",
    "time": 1784202751
  },
  "_maintainer": {
    "name": "Karl W Broman",
    "email": "broman@wisc.edu",
    "login": "kbroman",
    "mastodon": "@kbroman@rstats.me",
    "orcid": "0000-0002-4914-6671",
    "description": "Professor in Dept of Biostatistics & Medical Informatics at UW–Madison. Applied statistician working on statistical genomics.\n",
    "uuid": 53972
  },
  "_distro": "resolute",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.5.0",
      "role": "Depends"
    },
    {
      "package": "Rcpp",
      "role": "LinkingTo"
    },
    {
      "package": "Rcpp",
      "version": ">= 0.12.12",
      "role": "Imports"
    },
    {
      "package": "testthat",
      "role": "Suggests"
    },
    {
      "package": "devtools",
      "role": "Suggests"
    },
    {
      "package": "roxygen2",
      "role": "Suggests"
    },
    {
      "package": "qtl2",
      "role": "Suggests"
    }
  ],
  "_owner": "rqtl",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2026-22",
      "n": 3
    },
    {
      "week": "2026-25",
      "n": 1
    },
    {
      "week": "2026-29",
      "n": 1
    }
  ],
  "_tags": [],
  "_stars": 4,
  "_contributors": [
    {
      "user": "kbroman",
      "count": 85,
      "uuid": 53972
    }
  ],
  "_userbio": {
    "uuid": 9142954,
    "type": "organization",
    "name": "R/qtl",
    "followers": 12
  },
  "_downloads": {
    "count": 235,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/mmconvert"
  },
  "_devurl": "https://github.com/rqtl/mmconvert",
  "_searchresults": 19,
  "_topics": [
    "cpp"
  ],
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/mmconvert.html",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/rqtl/mmconvert",
  "_realowner": "rqtl",
  "_cranurl": true,
  "_releases": [
    {
      "version": "0.8",
      "date": "2023-03-29"
    },
    {
      "version": "0.10",
      "date": "2023-04-25"
    },
    {
      "version": "0.12",
      "date": "2025-05-13"
    }
  ],
  "_exports": [
    "cross2_to_grcm39",
    "mmconvert"
  ],
  "_datasets": [
    {
      "name": "coxmap",
      "title": "Mouse genetic map based on Cox et al. doi:10.1534/genetics.109.105486 <https://doi.org/10.1534/genetics.109.105486>, revised for mouse genome build 39.",
      "object": "coxmap",
      "class": [
        "data.frame"
      ],
      "fields": [
        "marker",
        "chr",
        "cM_coxV3_ave",
        "cM_coxV3_female",
        "cM_coxV3_male",
        "bp_grcm39"
      ],
      "rows": 10172,
      "table": true,
      "tojson": true
    },
    {
      "name": "grcm39_chrlen",
      "title": "Mouse chromosome lengths in basepairs for build GRCm39",
      "object": "grcm39_chrlen",
      "class": [
        "integer"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    },
    {
      "name": "MUGAmaps",
      "title": "Array annotation information for the mouse MUGA arrays in mouse genome build 39.",
      "object": "MUGAmaps",
      "class": [
        "list"
      ],
      "fields": [],
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "coxmap",
      "title": "Mouse genetic map based on Cox et al. doi:10.1534/genetics.109.105486 <https://doi.org/10.1534/genetics.109.105486>, revised for mouse genome build 39.",
      "topics": [
        "coxmap"
      ]
    },
    {
      "page": "cross2_to_grcm39",
      "title": "Convert a cross2 object to use mouse build GRCm39",
      "topics": [
        "cross2_to_grcm39"
      ]
    },
    {
      "page": "grcm39_chrlen",
      "title": "Mouse chromosome lengths in basepairs for build GRCm39",
      "topics": [
        "grcm39_chrlen"
      ]
    },
    {
      "page": "mmconvert",
      "title": "Convert mouse genome positions",
      "topics": [
        "mmconvert"
      ]
    },
    {
      "page": "MUGAmaps",
      "title": "Array annotation information for the mouse MUGA arrays in mouse genome build 39.",
      "topics": [
        "MUGAmaps"
      ]
    }
  ],
  "_readme": "https://github.com/rqtl/mmconvert/raw/HEAD/README.md",
  "_rundeps": [
    "Rcpp"
  ],
  "_sysdeps": [
    {
      "shlib": "libstdc++",
      "package": "libstdc++6",
      "source": "gcc",
      "version": "16-20260322-1ubuntu1",
      "name": "c++",
      "homepage": "http://gcc.gnu.org/",
      "description": "GNU Standard C++ Library v3"
    }
  ],
  "_score": 4.056904851336473,
  "_indexed": true,
  "_nocasepkg": "mmconvert",
  "_universes": [
    "rqtl",
    "kbroman"
  ],
  "_previous": "0.12",
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.13-1",
      "date": "2026-07-16T13:24:16.000Z",
      "distro": "resolute",
      "arch": "aarch64",
      "commit": "140bf23d74d73798455a0690972746dbbaba8e11",
      "fileid": "https://r2.ropensci.org/5153d6b782aca434a613309f59a8f8e787e3d00cb91bc13b771361a2fabe20cb",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/rqtl/actions/runs/29501590075"
    },
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.13-1",
      "date": "2026-07-16T13:23:48.000Z",
      "distro": "resolute",
      "arch": "x86_64",
      "commit": "140bf23d74d73798455a0690972746dbbaba8e11",
      "fileid": "https://r2.ropensci.org/eb40506a08ec86c8f17f3bb767e1bd3735acd2d54ec1474e3a06c0874ff95f33",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/rqtl/actions/runs/29501590075"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "0.13-1",
      "date": "2026-07-16T13:23:56.000Z",
      "distro": "resolute",
      "arch": "aarch64",
      "commit": "140bf23d74d73798455a0690972746dbbaba8e11",
      "fileid": "https://r2.ropensci.org/bbbceb3a3b30b4b5bb72ba4ef33a1fe878f70fb25995a8310247b729bf612f91",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/rqtl/actions/runs/29501590075"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "0.13-1",
      "date": "2026-07-16T13:23:57.000Z",
      "distro": "resolute",
      "arch": "x86_64",
      "commit": "140bf23d74d73798455a0690972746dbbaba8e11",
      "fileid": "https://r2.ropensci.org/1dcfd090a3bf14ea48a82056d436daf6992b4f1033391f93a223a110b5ae1ae9",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/rqtl/actions/runs/29501590075"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.13-1",
      "date": "2026-07-16T13:24:06.000Z",
      "arch": "aarch64",
      "commit": "140bf23d74d73798455a0690972746dbbaba8e11",
      "fileid": "https://r2.ropensci.org/387f9a7c68d31a258a8dcda8565ee0be90cb925c296fe37cae932a14d5830a24",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/rqtl/actions/runs/29501590075"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.13-1",
      "date": "2026-07-16T13:24:28.000Z",
      "arch": "x86_64",
      "commit": "140bf23d74d73798455a0690972746dbbaba8e11",
      "fileid": "https://r2.ropensci.org/9d75a516321d15919fcde9e1c07edd996a9782a559ccca0a040c11d669632e17",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/rqtl/actions/runs/29501590075"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "0.13-1",
      "date": "2026-07-16T13:23:05.000Z",
      "arch": "aarch64",
      "commit": "140bf23d74d73798455a0690972746dbbaba8e11",
      "fileid": "https://r2.ropensci.org/ed07b01c0f7486b39ff5bb541feda7ce1f75e04294876f2c2f31b878adc759bf",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/rqtl/actions/runs/29501590075"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "0.13-1",
      "date": "2026-07-16T13:26:43.000Z",
      "arch": "x86_64",
      "commit": "140bf23d74d73798455a0690972746dbbaba8e11",
      "fileid": "https://r2.ropensci.org/c3e5967feafc18a4900d6dd2a813ecb9dd1c40c2865b68d52af2ae9c87161f93",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/rqtl/actions/runs/29501590075"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.13-1",
      "date": "2026-07-16T13:23:39.000Z",
      "arch": "emscripten",
      "commit": "140bf23d74d73798455a0690972746dbbaba8e11",
      "fileid": "https://r2.ropensci.org/7302d9245727577bd2d714f185aeaf96fd8e0f399cff24e1aec1b92b870ad7fe",
      "status": "success",
      "buildurl": "https://github.com/r-universe/rqtl/actions/runs/29501590075"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.13-1",
      "date": "2026-07-16T13:22:37.000Z",
      "arch": "x86_64",
      "commit": "140bf23d74d73798455a0690972746dbbaba8e11",
      "fileid": "https://r2.ropensci.org/df93eef9143aae2a342c09cfeeb182af226359f9153237b6cfd26fb409643668",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/rqtl/actions/runs/29501590075"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.13-1",
      "date": "2026-07-16T13:22:46.000Z",
      "arch": "x86_64",
      "commit": "140bf23d74d73798455a0690972746dbbaba8e11",
      "fileid": "https://r2.ropensci.org/af4ceebf3c21678cf1e49c71256ac776d6545fb653eb09715ddcf33bf9c86df0",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/rqtl/actions/runs/29501590075"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "0.13-1",
      "date": "2026-07-16T13:22:40.000Z",
      "arch": "x86_64",
      "commit": "140bf23d74d73798455a0690972746dbbaba8e11",
      "fileid": "https://r2.ropensci.org/b56d14b1c3e24b92e82d440019008f0dc92f74055209668b9f3738dcab864c1f",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/rqtl/actions/runs/29501590075"
    }
  ]
}