{ "_id": "6a49b312dbd0482285eb5916", "Package": "qtl2bioc", "Version": "0.22", "Date": "2020-05-21", "Title": "Connect to Bioconductor for QTL Experiments", "Description": "Functions to connect to genome databases via Bioconductor,\nsuch as to obtain gene annotation information. Part of R/qtl2,\na reimplementation of the R/qtl package to better handle\nhigh-dimensional data and complex cross designs.", "Author": "Karl W Broman [aut, cre]\n()", "Maintainer": "Karl W Broman ", "Authors@R": "c(person(\"Karl W\", \"Broman\", role=c(\"aut\", \"cre\"),\nemail=\"broman@wisc.edu\", comment=c(ORCID = \"0000-0002-4914-6671\")))", "License": "GPL-3", "URL": "https://kbroman.org/qtl2/, https://github.com/rqtl/qtl2bioc", "BugReports": "https://github.com/rqtl/qtl2bioc/issues", "Encoding": "UTF-8", "ByteCompile": "true", "Roxygen": "list(markdown=TRUE)", "Remotes": [ "bioc/GenomicRanges", "bioc/AnnotationHub" ], "Config/roxygen2/version": "8.0.0", "Config/pak/sysreqs": "libicu-dev libpng-dev libssl-dev zlib1g-dev", "Repository": "https://rqtl.r-universe.dev", "Date/Publication": "2026-06-19 11:18:14 UTC", "RemoteUrl": "https://github.com/rqtl/qtl2bioc", "RemoteRef": "HEAD", "RemoteSha": "07fe69391ee6819dd9198ffaac1c8d44af2e5a1b", "NeedsCompilation": "no", "Packaged": { "Date": "2026-06-19 13:42:44 UTC", "User": "root" }, "_user": "rqtl", "_type": "src", "_file": "qtl2bioc_0.22.tar.gz", "_fileid": "https://r2.ropensci.org/ef27a2c9bbee92d0ee377caf663ac5d08f8f6b4c33056c51aace154d3581e668", "_filesize": 99173, "_sha256": "ef27a2c9bbee92d0ee377caf663ac5d08f8f6b4c33056c51aace154d3581e668", "_expires": "2026-10-13T01:27:44.000Z", "_created": "2026-06-19T13:42:44.000Z", "_published": "2026-07-05T01:27:46.271Z", "_jobs": [ { "job": 85182476809, "time": 215, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7751294994" }, { "job": 85182476776, "time": 212, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7751294029" }, { "job": 85182476708, "time": 158, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "7751529052" }, { "job": 85182476753, "time": 117, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7751501664" }, { "job": 85182476616, "time": 242, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7751215992" }, { "job": 85182476844, "time": 138, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7751267054" }, { "job": 85182476799, "time": 153, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "7751273131" }, { "job": 85182476722, "time": 154, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "7751273330" }, { "job": 85182476666, "time": 175, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "7751281265" } ], "_host": "GitHub-Actions", "_buildurl": "https://github.com/r-universe/rqtl/actions/runs/27829107737", "_status": "success", "_upstream": "https://github.com/rqtl/qtl2bioc", "_commit": { "id": "07fe69391ee6819dd9198ffaac1c8d44af2e5a1b", "author": "Karl Broman ", "committer": "Karl Broman ", "message": "Remove name from README\n", "time": 1781867894 }, "_maintainer": { "name": "Karl W Broman", "email": "broman@wisc.edu", "login": "kbroman", "mastodon": "@kbroman@rstats.me", "orcid": "0000-0002-4914-6671", "description": "Professor in Dept of Biostatistics & Medical Informatics at UW–Madison. Applied statistician working on statistical genomics.\n", "uuid": 53972 }, "_distro": "noble", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.1.0", "role": "Depends" }, { "package": "GenomicRanges", "role": "Imports" }, { "package": "AnnotationHub", "role": "Imports" }, { "package": "testthat", "role": "Suggests" }, { "package": "devtools", "role": "Suggests" }, { "package": "roxygen2", "role": "Suggests" } ], "_owner": "rqtl", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2026-23", "n": 8 }, { "week": "2026-25", "n": 1 } ], "_tags": [], "_stars": 1, "_contributors": [ { "user": "kbroman", "count": 51, "uuid": 53972 } ], "_userbio": { "uuid": 9142954, "type": "organization", "name": "R/qtl", "followers": 12 }, "_downloads": { "count": 0, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/qtl2bioc" }, "_devurl": "https://github.com/rqtl/qtl2bioc", "_searchresults": 0, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/NEWS.html", "extra/NEWS.txt", "extra/qtl2bioc.html", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_cranurl": false, "_exports": [ "create_ensembl_query_func", "grab_ensembl" ], "_help": [ { "page": "create_ensembl_query_func", "title": "Create a function to query genes", "topics": [ "create_ensembl_query_func" ] }, { "page": "grab_ensembl", "title": "Grab ensembl gene annotations", "topics": [ "grab_ensembl" ] } ], "_readme": "https://github.com/rqtl/qtl2bioc/raw/HEAD/README.md", "_rundeps": [ "AnnotationDbi", "AnnotationHub", "askpass", "Biobase", "BiocBaseUtils", "BiocFileCache", "BiocGenerics", "BiocManager", "BiocVersion", "Biostrings", "bit", "bit64", "blob", "cachem", "cli", "cpp11", "crayon", "curl", "DBI", "dbplyr", "dplyr", "fastmap", "filelock", "generics", "GenomicRanges", "glue", "httr", "httr2", "IRanges", "jsonlite", "KEGGREST", "lifecycle", "magrittr", "memoise", "mime", "openssl", "pillar", "pkgconfig", "png", "purrr", "R6", "rappdirs", "rlang", "RSQLite", "S4Vectors", "Seqinfo", "stringi", "stringr", "sys", "tibble", "tidyr", "tidyselect", "utf8", "vctrs", "withr", "XVector", "yaml" ], "_score": 2, "_indexed": true, "_nocasepkg": "qtl2bioc", "_universes": [ "rqtl", "kbroman" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.22", "date": "2026-06-19T13:45:25.000Z", "distro": "noble", "commit": "07fe69391ee6819dd9198ffaac1c8d44af2e5a1b", "fileid": "https://r2.ropensci.org/0a0a2ebb7ca9ee7d165e5174930a9fee308379662d5c0e6b0d64969aebd49e54", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/rqtl/actions/runs/27829107737" }, { "r": "4.6.0", "os": "linux", "version": "0.22", "date": "2026-06-19T13:45:21.000Z", "distro": "noble", "commit": "07fe69391ee6819dd9198ffaac1c8d44af2e5a1b", "fileid": "https://r2.ropensci.org/7e00f90fad1b0fa79e0c706dbd5c414a059fb12f7c58432451390034641f4785", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/rqtl/actions/runs/27829107737" }, { "r": "4.5.3", "os": "mac", "version": "0.22", "date": "2026-06-19T13:56:59.000Z", "commit": "07fe69391ee6819dd9198ffaac1c8d44af2e5a1b", "fileid": "https://r2.ropensci.org/72dfae3b781b22fe9d4cea9e52a5b2ee3fbed0c5eb5657dd4b06a5dcc3f090c8", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/rqtl/actions/runs/27829107737" }, { "r": "4.6.0", "os": "mac", "version": "0.22", "date": "2026-06-19T13:55:54.000Z", "commit": "07fe69391ee6819dd9198ffaac1c8d44af2e5a1b", "fileid": "https://r2.ropensci.org/98acbeeacb19939224d98fe2a2d96c11444da65a99c260baa34e56b4631fbb30", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/rqtl/actions/runs/27829107737" }, { "r": "4.6.0", "os": "wasm", "version": "0.22", "date": "2026-06-19T13:45:23.000Z", "commit": "07fe69391ee6819dd9198ffaac1c8d44af2e5a1b", "fileid": "https://r2.ropensci.org/c048e5ddf65f5429509b68374c6e6cbf75e7ed3fcdd6295aa6fda2e9eaa85dd1", "status": "success", "buildurl": "https://github.com/r-universe/rqtl/actions/runs/27829107737" }, { "r": "4.7.0", "os": "win", "version": "0.22", "date": "2026-06-19T13:44:23.000Z", "commit": "07fe69391ee6819dd9198ffaac1c8d44af2e5a1b", "fileid": "https://r2.ropensci.org/f52d220884d1236765ab3c895e263c497694dfd6663eb619e98106eefd683c2b", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/rqtl/actions/runs/27829107737" }, { "r": "4.5.3", "os": "win", "version": "0.22", "date": "2026-06-19T13:44:24.000Z", "commit": "07fe69391ee6819dd9198ffaac1c8d44af2e5a1b", "fileid": "https://r2.ropensci.org/24901a55dc234c6c6d704cc5a0980f9dfac6af85e3f24bf2111d171cccc2b23a", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/rqtl/actions/runs/27829107737" }, { "r": "4.6.0", "os": "win", "version": "0.22", "date": "2026-06-19T13:44:42.000Z", "commit": "07fe69391ee6819dd9198ffaac1c8d44af2e5a1b", "fileid": "https://r2.ropensci.org/e1e696fca75311ad723d52fd16d0a1c4e070499eda5a1a6db3473aac28dafab0", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/rqtl/actions/runs/27829107737" } ] }