Changes in version 0.30 (2024-11-23)                  

Bug fixes

  - Fix problem in replace_path() example on Windows.

                  Changes in version 0.28 (2024-07-16)                  

Minor changes

  - Fixed link in documentation.

                  Changes in version 0.26 (2021-10-07)                  

Minor changes

  - If needed directory doesn't exist, create it rather than stopping
    with an error (fst_genoprob() and bind_fst() and functions that call
    them). Fixes Issue #17.

  - Fix some URLs in Readme, News, and vignette.

  - Have fst_genoprob() and genoprob_to_alleleprob_fst() check that
    input is of class "calc_genoprob".

                  Changes in version 0.24 (2021-04-28)                  

Minor changes

  - Fix index entry in vignette

  - Added tests for qtl2::calc_het() (which previously wasn't working
    with qtl2fst-based probabilities). Also added tests of
    qtl2::calc_entropy(), qtl2::calc_geno_freq(), and
    qtl2::compare_genoprob(). These tests fail without qtl2 >= 0.24, so
    added that in Imports in the description file.

  - Removed LazyData field from DESCRIPTION file

                 Changes in version 0.22-7 (2020-07-30)                 

Minor changes

  - Small changes to prepare to post on CRAN.

                        Changes in version 0.22                         

Major changes

  - Added calc_genoprob_fst() which combines calc_genoprob() and
    fst_genoprob() to save use of RAM when calculating genotype
    probabilities.

  - Added genoprob_to_alleleprob_fst() which combines
    genoprob_to_alleleprob() and fst_genoprob() to save use of RAM when
    converting genotype probabilities to allele dosages.

  - Added summary() and print() functions for "fst_genoprob" objects.

  - Rewrote the vignette using the iron dataset, so that it's faster to
    build.

Minor changes

  - Fixed use of class(), avoiding constructions like "blah" %in%
    class(object) and instead using inherits(object, "blah").

                        Changes in version 0.20                         

Minor changes

  - Renumbering to match R/qtl2 version

  - Use Markdown for function documentation, throughout

                        Changes in version 0.2-2                        

Interface changes

  - fst_genoprob(): added quiet argument, to replace verbose which we'll
    ultimately remove. Also added an argument overwrite; if FALSE (the
    default), refuse to overwrite the .fst files.

  - Renamed fst2calc_genoprob() as fst_extract(). The function with the
    original name will remain for a while, but will give a warning.

  - Renamed fst_genoprob_restore() as `fst_restore(). The function with
    the original name will remain for a while, but will give a warning.

New features

  - When fst_genoprob() creates the set of .fst files with the genotype
    probabilities, it also creates a .rds file with the index object.
    Load this object with readRDS(). cbind.fst_genoprob() and
    rbind.fst_genoprob() will write the index .fst file for the new
    object.

  - Added overwrite and quiet arguments to cbind.fst_genoprob() and
    rbind.fst_genoprob().

  - Added a function fst_path() for viewing the path to the files behind
    an "fst_genoprob" database.

  - Added a function fst_files() for viewing the set of files behind an
    "fst_genoprob" database.

  - Added a function replace_path() for replacing the file path within a
    "fst_genoprob" object.

                        Changes in version 0.1-3                        

  - New package for storing R/qtl2 genotype probabilities in files using
    the fst package, for fast access with reduced memory usage.