Package: GWASapi 0.1-4
Karl W Broman
GWASapi: NHGRI-EBI GWAS Catalog of Summary Statistics
Tools for connecting to the NHGRI-EBI API for GWAS summary statistics.
Authors:
GWASapi_0.1-4.tar.gz
GWASapi_0.1-4.zip(r-4.7)GWASapi_0.1-4.zip(r-4.6)GWASapi_0.1-4.zip(r-4.5)
GWASapi_0.1-4.tgz(r-4.6-any)GWASapi_0.1-4.tgz(r-4.5-any)
GWASapi_0.1-4.tar.gz(r-4.7-any)GWASapi_0.1-4.tar.gz(r-4.6-any)
GWASapi_0.1-4.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
GWASapi/json (API)
NEWS
| # Install 'GWASapi' in R: |
| install.packages('GWASapi', repos = c('https://rqtl.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/rqtl/gwasapi/issues
Last updated from:aaf3b32ca7. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | OK | 188 | ||
| source / vignettes | OK | 189 | ||
| linux-release-x86_64 | OK | 175 | ||
| macos-release-arm64 | OK | 152 | ||
| macos-oldrel-arm64 | OK | 149 | ||
| windows-devel | OK | 143 | ||
| windows-release | OK | 122 | ||
| windows-oldrel | OK | 140 | ||
| wasm-release | OK | 116 |
Exports:check_gwasapiget_assoget_trait_assoget_variantinfo_studylist_chrlist_studieslist_traits
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Check if the GWAS Catalog is live | check_gwasapi |
| Get GWAS associations for a given region | get_asso |
| Get GWAS associations for a particular trait | get_trait_asso |
| Get associations for a given variant | get_variant |
| Information about a study | info_study |
| List chromosomes | list_chr |
| List studies | list_studies |
| List traits | list_traits |
