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Links torqtl

qtl2 - Quantitative Trait Locus Mapping in Experimental Crosses

Provides a set of tools to perform quantitative trait locus (QTL) analysis in experimental crosses. It is a reimplementation of the 'R/qtl' package to better handle high-dimensional data and complex cross designs. Broman et al. (2019) <doi:10.1534/genetics.118.301595>.

Last updated 3 months ago

9.61 score 34 stars 5 packages 1.1k scripts 615 downloads

qtl2convert - Convert Data among QTL Mapping Packages

Functions to convert data structures among the 'qtl2', 'qtl', and 'DOQTL' packages for mapping quantitative trait loci (QTL).

Last updated 8 months ago

5.21 score 5 stars 1 packages 216 scripts 288 downloads

qtl2fst - Database Storage of Genotype Probabilities for QTL Mapping

Uses the 'fst' package to store genotype probabilities on disk for the 'qtl2' package. These genotype probabilities are a central data object for mapping quantitative trait loci (QTL), but they can be quite large. The facilities in this package enable the genotype probabilities to be stored on disk, leading to reduced memory usage with only a modest increase in computation time.

Last updated 4 months ago

4.68 score 2 stars 1 packages 16 scripts 258 downloads

mmconvert - Mouse Map Converter

Convert mouse genome positions between the build 39 physical map and the genetic map of Cox et al. (2009) <doi:10.1534/genetics.109.105486>.

Last updated 1 years ago

3.35 score 3 stars 15 scripts 253 downloads