Package: mmconvert 0.12

Karl W Broman

mmconvert: Mouse Map Converter

Convert mouse genome positions between the build 39 physical map and the genetic map of Cox et al. (2009) <doi:10.1534/genetics.109.105486>.

Authors:Karl W Broman [aut, cre]

mmconvert_0.12.tar.gz
mmconvert_0.12.zip(r-4.7)mmconvert_0.12.zip(r-4.6)mmconvert_0.12.zip(r-4.5)
mmconvert_0.12.tgz(r-4.6-x86_64)mmconvert_0.12.tgz(r-4.6-arm64)mmconvert_0.12.tgz(r-4.5-x86_64)mmconvert_0.12.tgz(r-4.5-arm64)
mmconvert_0.12.tar.gz(r-4.7-arm64)mmconvert_0.12.tar.gz(r-4.7-x86_64)mmconvert_0.12.tar.gz(r-4.6-arm64)mmconvert_0.12.tar.gz(r-4.6-x86_64)
mmconvert_0.12.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
mmconvert/json (API)
NEWS

# Install 'mmconvert' in R:
install.packages('mmconvert', repos = c('https://rqtl.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/rqtl/mmconvert/issues

Uses libs:
  • c++– GNU Standard C++ Library v3
Datasets:
  • coxmap - Mouse genetic map based on Cox et al. doi:10.1534/genetics.109.105486 <https://doi.org/10.1534/genetics.109.105486>, revised for mouse genome build 39.
  • grcm39_chrlen - Mouse chromosome lengths in basepairs for build GRCm39
  • MUGAmaps - Array annotation information for the mouse MUGA arrays in mouse genome build 39.

On CRAN:

Conda:

cpp

3.56 score 4 stars 18 scripts 157 downloads 2 exports 1 dependencies

Last updated from:eaf6557bc1. Checks:13 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-arm64OK135
linux-devel-x86_64OK148
source / vignettesOK176
linux-release-arm64OK142
linux-release-x86_64OK148
macos-release-arm64OK107
macos-release-x86_64OK224
macos-oldrel-arm64OK99
macos-oldrel-x86_64OK262
windows-develOK140
windows-releaseOK136
windows-oldrelOK160
wasm-releaseOK120

Exports:cross2_to_grcm39mmconvert

Dependencies:Rcpp