Package: mmconvert 0.14

Karl W Broman

mmconvert: Mouse Map Converter

Convert mouse genome positions between the build 39 physical map and the genetic map of Cox et al. (2009) <doi:10.1534/genetics.109.105486>.

Authors:Karl W Broman [aut, cre]

mmconvert_0.14.tar.gz
mmconvert_0.14.zip(r-4.7-x86_64)mmconvert_0.14.zip(r-4.7-arm64)mmconvert_0.14.zip(r-4.6-x86_64)mmconvert_0.14.zip(r-4.6-arm64)mmconvert_0.14.zip(r-4.5-x86_64)
mmconvert_0.14.tgz(r-4.6-x86_64)mmconvert_0.14.tgz(r-4.6-arm64)mmconvert_0.14.tgz(r-4.5-x86_64)mmconvert_0.14.tgz(r-4.5-arm64)
mmconvert_0.14.tar.gz(r-4.7-arm64)mmconvert_0.14.tar.gz(r-4.7-x86_64)mmconvert_0.14.tar.gz(r-4.6-arm64)mmconvert_0.14.tar.gz(r-4.6-x86_64)
mmconvert_0.14.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
mmconvert/json (API)

# Install 'mmconvert' in R:
install.packages('mmconvert', repos = c('https://rqtl.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/rqtl/mmconvert/issues

Uses libs:
  • c++– GNU Standard C++ Library v3
Datasets:
  • coxmap - Mouse genetic map based on Cox et al. doi:10.1534/genetics.109.105486 <https://doi.org/10.1534/genetics.109.105486>, revised for mouse genome build 39.
  • grcm39_chrlen - Mouse chromosome lengths in basepairs for build GRCm39
  • MUGAmaps - Array annotation information for the mouse MUGA arrays in mouse genome build 39.

On CRAN:

Conda:

cpp

4.06 score 4 stars 19 scripts 314 downloads 2 exports 1 dependencies

Last updated from:e362eb7e96. Checks:15 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-arm64OK140
linux-devel-x86_64OK144
source / vignettesOK197
linux-release-arm64OK107
linux-release-x86_64OK130
macos-release-arm64OK116
macos-release-x86_64OK291
macos-oldrel-arm64OK74
macos-oldrel-x86_64OK214
windows-devel-arm64OK337
windows-devel-x86_64OK108
windows-release-arm64OK339
windows-release-x86_64OK113
windows-oldrel-x86_64OK78
wasm-releaseOK110

Exports:cross2_to_grcm39mmconvert

Dependencies:Rcpp