Package: mmconvert 0.11-2

Karl W Broman

mmconvert: Mouse Map Converter

Convert mouse genome positions between the build 39 physical map and the genetic map of Cox et al. (2009) <doi:10.1534/genetics.109.105486>.

Authors:Karl W Broman [aut, cre]

# Install 'mmconvert' in R:

install.packages('mmconvert', repos = c('https://rqtl.r-universe.dev', 'https://cloud.r-project.org'))

Uses libs:

Datasets:

MUGAmaps - Array annotation information for the mouse MUGA arrays in mouse genome build 39.
coxmap - Mouse genetic map based on Cox et al. doi:10.1534/genetics.109.105486 <https://doi.org/10.1534/genetics.109.105486>, revised for mouse genome build 39.
grcm39_chrlen - Mouse chromosome lengths in basepairs for build GRCm39

On CRAN:

Last updated 1 years agofrom:bb1847e1d3. Checks:OK: 9. Indexed: yes.

Dependencies:Rcpp

Help page	Topics
Mouse genetic map based on Cox et al. doi:10.1534/genetics.109.105486 <https://doi.org/10.1534/genetics.109.105486>, revised for mouse genome build 39.	coxmap
Convert a cross2 object to use mouse build GRCm39	cross2_to_grcm39
Mouse chromosome lengths in basepairs for build GRCm39	grcm39_chrlen
Convert mouse genome positions	mmconvert
Array annotation information for the mouse MUGA arrays in mouse genome build 39.	MUGAmaps