Package: qtl2convert 0.30

Karl W Broman

qtl2convert: Convert Data among QTL Mapping Packages

Functions to convert data structures among the 'qtl2', 'qtl', and 'DOQTL' packages for mapping quantitative trait loci (QTL).

Authors:Karl W Broman [aut, cre]

# Install 'qtl2convert' in R:

install.packages('qtl2convert', repos = c('https://rqtl.r-universe.dev', 'https://cloud.r-project.org'))

Uses libs:

On CRAN:

Last updated 6 months agofrom:cc1f2caaa3. Checks:OK: 9. Indexed: yes.

Help page	Topics
Combine matrices by columns, replacing matching ones and adding unique ones	cbind_smother
Count the unique genotypes for each row of a genotype matrix	count_unique_geno
Convert cross2 object from do to genail8	cross2_do_to_genail cross2_do_to_genail8
Convert cross2 object from ril to genril	cross2_ril_to_genril
Encode a matrix of genotypes using a set of allele codes	encode_geno
Find the consensus genotype for each row of a genotype matrix	find_consensus_geno
Find the unique genotypes for each row of a genotype matrix	find_unique_geno
Marker map data frame to list	map_df_to_list
Marker map list to data frame	map_list_to_df
Convert DOQTL genotype probabilities to R/qtl2 format	probs_doqtl_to_qtl2
Convert R/qtl genotype probabilities to R/qtl2 format	probs_qtl_to_qtl2
Convert R/qtl2 genotype probabilities to a 3d array	probs_qtl2_to_array
Convert R/qtl2 genotype probabilities to DOQTL format	probs_qtl2_to_doqtl
Convert R/qtl scanone results to R/qtl2 scan1 format	scan_qtl_to_qtl2
Convert scan1 results to the scanone format	scan_qtl2_to_qtl
Write a data frame to a CSV file	write2csv