Package: qtl2fst 0.30

Karl W Broman

qtl2fst: Database Storage of Genotype Probabilities for QTL Mapping

Uses the 'fst' package to store genotype probabilities on disk for the 'qtl2' package. These genotype probabilities are a central data object for mapping quantitative trait loci (QTL), but they can be quite large. The facilities in this package enable the genotype probabilities to be stored on disk, leading to reduced memory usage with only a modest increase in computation time.

Authors:Karl W Broman [aut, cre], Brian S Yandell [aut], Petr Simecek [aut]

qtl2fst_0.30.tar.gz
qtl2fst_0.30.zip(r-4.7)qtl2fst_0.30.zip(r-4.6)qtl2fst_0.30.zip(r-4.5)
qtl2fst_0.30.tgz(r-4.6-any)qtl2fst_0.30.tgz(r-4.5-any)
qtl2fst_0.30.tar.gz(r-4.7-any)qtl2fst_0.30.tar.gz(r-4.6-any)
qtl2fst_0.30.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
qtl2fst/json (API)
NEWS

# Install 'qtl2fst' in R:
install.packages('qtl2fst', repos = c('https://rqtl.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/rqtl/qtl2fst/issues

On CRAN:

Conda:

4.78 score 2 stars 1 packages 20 scripts 268 downloads 13 exports 23 dependencies

Last updated from:b7de82f740. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK149
source / vignettesOK205
linux-release-x86_64OK188
macos-release-arm64OK82
macos-oldrel-arm64OK120
windows-develOK142
windows-releaseOK94
windows-oldrelOK133
wasm-releaseOK112

Exports:calc_genoprob_fstcbind.fst_genoprobfst_extractfst_filesfst_genoprobfst_genoprob_restorefst_pathfst_restorefst2calc_genoprobgenoprob_to_alleleprob_fstrbind.fst_genoprobreplace_pathsubset_fst_genoprob

Dependencies:bitbit64blobcachemclicpp11data.tableDBIfastmapfstfstcoregluejsonlitelifecyclememoisepkgconfigqtl2RcppRcppEigenrlangRSQLitevctrsyaml

qtl2fst user guide

Rendered fromqtl2fst.Rmdusingknitr::rmarkdownon Jun 16 2026.

Last update: 2021-04-28
Started: 2019-07-16