Package: qtl2fst 0.30

Karl W Broman

qtl2fst: Database Storage of Genotype Probabilities for QTL Mapping

Uses the 'fst' package to store genotype probabilities on disk for the 'qtl2' package. These genotype probabilities are a central data object for mapping quantitative trait loci (QTL), but they can be quite large. The facilities in this package enable the genotype probabilities to be stored on disk, leading to reduced memory usage with only a modest increase in computation time.

Authors:Karl W Broman [aut, cre], Brian S Yandell [aut], Petr Simecek [aut]

qtl2fst_0.30.tar.gz
qtl2fst_0.30.zip(r-4.7)qtl2fst_0.30.zip(r-4.6)qtl2fst_0.30.zip(r-4.5)
qtl2fst_0.30.tgz(r-4.6-any)qtl2fst_0.30.tgz(r-4.5-any)
qtl2fst_0.30.tar.gz(r-4.7-any)qtl2fst_0.30.tar.gz(r-4.6-any)
qtl2fst_0.30.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
qtl2fst/json (API)
NEWS

# Install 'qtl2fst' in R:
install.packages('qtl2fst', repos = c('https://rqtl.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/rqtl/qtl2fst/issues

On CRAN:

Conda:

4.71 score 2 stars 1 packages 17 scripts 270 downloads 13 exports 23 dependencies

Last updated from:b7de82f740. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK178
source / vignettesOK183
linux-release-x86_64OK128
macos-release-arm64OK187
macos-oldrel-arm64OK182
windows-develOK199
windows-releaseOK107
windows-oldrelOK100
wasm-releaseOK109

Exports:calc_genoprob_fstcbind.fst_genoprobfst_extractfst_filesfst_genoprobfst_genoprob_restorefst_pathfst_restorefst2calc_genoprobgenoprob_to_alleleprob_fstrbind.fst_genoprobreplace_pathsubset_fst_genoprob

Dependencies:bitbit64blobcachemclicpp11data.tableDBIfastmapfstfstcoregluejsonlitelifecyclememoisepkgconfigqtl2RcppRcppEigenrlangRSQLitevctrsyaml

qtl2fst user guide

Rendered fromqtl2fst.Rmdusingknitr::rmarkdownon May 22 2026.

Last update: 2021-04-28
Started: 2019-07-16